| Set | No. | Name | Rarity | |
|---|---|---|---|---|
| Expansion Pack | 39 | Magneton | Holo Rare | |
| Rulers of the Heavens | 022/054 | Magneton | Rare | |
| Flight of Legends | 040/082 | Magneton | Rare | |
| Mirage Forest | 035/086 | Magneton | Rare | |
| Holon Research Tower | 072/086 | Holons Magneton | Holo Rare | |
| 20th Anniversary Collection | 36 | Magneton | Rare | |
| Awakening Legends | 45 | Magneton | Holo Rare | |
| Dream League | 19 | Magneton | ||
| Leader's Stadium | 40 | Lt. Surge's Magneton | Holo Rare | |
| MEGA Dream ex | 46 | Magneton | ||
| Mega Symphonia | 28 | Magneton | Common | |
| Mystery of the Fossils | 25 | Magneton | Holo Rare | |
| Plasma Gale | 24 | Magneton | Uncommon | |
| Pokemon 151 | 82 | Magneton | Uncommon | |
| Pokemon VS | 28 | Jasmine's Magneton | Common | |
| Premium Champion Pack: EX x M x BREAK | 39 | Magneton | None | |
| Red Flash | 24 | Magneton | ||
| Rocket Gang | 30 | Dark Magneton | Holo Rare | |
| Sky Legend | 22 | Magneton | ||
| Super Electric Breaker | 35 | Magneton | Uncommon | |
| Super Electric Breaker | 112 | Magneton | Art Rare | |
| Tag Team GX All Stars | 87 | Magneton | None | |
| Time Gazer | 45 | Magneton | Common | |
| Ultra Force | 14 | Magneton | ||
| Ultra Shiny GX | 79 | Magneton | None | |
| Ultra Shiny GX | 188 | Magneton | Shiny Rare | |
| Ultra Sun | 36 | Magneton | Common | |
| Vending Series 2 (Red) | 15 | Magneton | Uncommon | |
| Violet ex | 27 | Magneton | Common | |
| VSTAR Universe | 95 | Magneton | None |