| Set | No. | Name | Rarity | |
|---|---|---|---|---|
| Base | 9 | Magneton | Rare Holo | |
| Base Set — Unlimited | 9 | Magneton | Rare Holo | |
| Fossil | 11 | Magneton | Rare Holo | |
| Fossil | 26 | Magneton | Rare | |
| Base Set 2 | 9 | Magneton | Rare Holo | |
| Team Rocket | 11 | Dark Magneton | Rare Holo | |
| Team Rocket | 28 | Dark Magneton | Rare | |
| Gym Heroes | 8 | Lt. Surge's Magneton | Rare Holo | |
| Legendary Collection | 28 | Magneton | Rare | |
| Aquapolis | H16 | Magneton | Rare Holo | |
| Aquapolis | 22 | Magneton | Rare | |
| Skyridge | H18 | Magneton | Rare Holo | |
| Skyridge | 19 | Magneton | Rare | |
| Skyridge | H19 | Magneton | Rare Holo | |
| Skyridge | 20 | Magneton | Rare | |
| Dragon | 17 | Magneton | Rare | |
| Dragon | 35 | Magneton | Uncommon | |
| EX Trainer Kit Latios | 5 | Magneton | ||
| FireRed & LeafGreen | 27 | Magneton | Rare | |
| Team Rocket Returns | 39 | Dark Magneton | Uncommon | |
| Delta Species | 22 | Holon's Magneton | Rare | |
| Delta Species | 48 | Magneton | Uncommon | |
| Legend Maker | 22 | Magneton | Rare | |
| Power Keepers | 16 | Magneton | Rare | |
| Diamond & Pearl | 54 | Magneton | Uncommon | |
| Stormfront | 42 | Magneton | Uncommon | |
| Stormfront | 43 | Magneton | Uncommon | |
| HS—Triumphant | 43 | Magneton | Uncommon | |
| Plasma Storm | 44 | Magneton | Uncommon | |
| Plasma Storm | 45 | Magneton | Uncommon | |
| BREAKthrough | 53 | Magneton | Uncommon | |
| Evolutions | 38 | Magneton | Rare Holo | |
| Ultra Prism | 82 | Magneton | Uncommon | |
| Unified Minds | 59 | Magneton | Uncommon | |
| Hidden Fates Shiny Vault | SV28 | Magneton | Rare Shiny | |
| Astral Radiance | 106 | Magneton | Uncommon | |
| Scarlet & Violet Black Star Promos | 153 | Magneton | Promo | |
| Scarlet & Violet Black Star Promos | 159 | Magneton | Promo | |
| Scarlet & Violet | 64 | Magneton | Common | |
| 151 | 82 | Magneton | Uncommon | |
| Mega Evolution | 46 | Magneton | Common | |
| Base Set (Shadowless) | 009 | Magneton | Holo Rare | |
| Cosmic Eclipse | 69 | Magneton | Rare Holo | |
| Forbidden Light | 35 | Magneton | Uncommon | |
| Neo Revelation | 10 | Magneton | Rare Holo | |
| Obsidian Flames | 64 | Magneton | Common | |
| Surging Sparks | 59 | Magneton | Uncommon |