| Set | No. | Name | Rarity | |
|---|---|---|---|---|
| Magma VS Aqua: Two Ambitions | 055/080 | Aerodactyl ex | Holo Rare | |
| Mirage Forest | 060/086 | Aerodactyl | Holo Rare | |
| Holon Phantom | 009/052 | Aerodactyl Delta Species | Uncommon | |
| Awakening Legends | 42 | Aerodactyl | Holo Rare | |
| Awakening of Psychic Kings | 56 | Aerodactyl | Uncommon | |
| Dark Rush | 39 | Aerodactyl | Uncommon | |
| Lost Abyss | 56 | Aerodactyl V | Double Rare | |
| Lost Abyss | 57 | Aerodactyl VSTAR | Triple Rare | |
| Lost Abyss | 105 | Aerodactyl V | Secret Rare | |
| Lost Abyss | 106 | Aerodactyl V | Secret Rare | |
| Lost Abyss | 118 | Aerodactyl VSTAR | Holo Rare | |
| Miracle Twins | 45 | Aerodactyl GX | Double Rare | |
| Miracle Twins | 100 | Aerodactyl GX | Super Rare | |
| Miracle Twins | 110 | Aerodactyl GX | Hyper Rare | |
| Mystery of the Fossils | 41 | Aerodactyl | Holo Rare | |
| Pokemon 151 | 142 | Aerodactyl | Rare | |
| Pokemon VS | 99 | Lance's Aerodactyl | Common | |
| Tag Bolt | 76 | Aerodactyl | Uncommon | |
| Vending Series 2 (Red) | 29 | Aerodactyl | Uncommon |